{"id":233,"date":"2013-08-19T11:31:51","date_gmt":"2013-08-19T14:31:51","guid":{"rendered":"http:\/\/lbi.iq.usp.br\/metazoo\/?page_id=233"},"modified":"2022-11-01T11:18:40","modified_gmt":"2022-11-01T14:18:40","slug":"publicacoes","status":"publish","type":"page","link":"https:\/\/lbi.usp.br\/metazoo\/publicacoes\/","title":{"rendered":"Publica\u00e7\u00f5es"},"content":{"rendered":"

2022<\/strong><\/p>\n

D. Amgarten, B. Iha, C.M. Piroupo, A.M. da Silva, J.C. Setubal. vHULK, a new tool for bacteriophage host prediction based on annotated genomic features and neural networks. Phage, accepted.<\/p>\n

2021<\/strong><\/p>\n

L. Braga, R.V. Pereira, L.F. Martins, L. Moura, F.B. Sanchez, J.S.P. Patan\u00e9, A.M. da Silva, J.C. Setubal. Genome-resolved metagenome and metatranscriptome analyses of thermophilic composting reveal key bacterial players and their metabolic interactions<\/a>. BMC Genomics, 22:652, 2021.<\/p>\n

2019<\/strong><\/p>\n

P.L. Ramos, S. Santos, S. Vasconcellos, R. Rocha, J.B. Cruz, P. Eugenio, M. Kondo, H. Cabral, M. Juliano, L. Juliano, J.C. Setubal, A.M. da Silva, L. Cappelini. A tropical composting operation unit at S\u00e3o Paulo Zoo as a source of bacterial proteolytic enzymes<\/a>. Applied Biochemistry and Biotechnology, 187(1), pp. 282-297, 2019.<\/p>\n

N. M. Silva, A. M. S. A. de Oliveira, S. Pegorin, C. E. Giustia, V. B. Ferraric, D. Barbosa, L. F. Martins, C. Morais, J. C. Setubal, S. P. Vasconcellos, A. M. da Silva, J. C. F. de Oliveira, R. C. Pascon, C. Viana-Niero. Characterization of novel hydrocarbon-degrading Gordonia paraffinivorans and Gordonia sihwensis strains isolated from composting<\/a>. PLoS ONE, journal.pone.0215396, April, 2019<\/p>\n

2018<\/strong><\/p>\n

A.M. Thomas, F.P. Lima, L.M.S. Moura, A.M. da Silva; E. Dias-Neto, J.C. Setubal. Comparative Metagenomics<\/a>. Methods in Molecular Biology, v. 1704, pp. 243-260. Springer New York, 2018.<\/p>\n

D. Amgarten, L.P.P. Braga, A.M. da Silva, J.C. Setubal. MARVEL, a Tool for Prediction of Bacteriophage Sequences in Metagenomic Bins<\/a>. Frontiers in Genetics, section Bioinformatics and Computational Biology, 304, 2018<\/p>\n

2017<\/strong><\/p>\n

L.N. Lemos, R.V. Pereira, R.B. Quaggio, L.F. Martins, L.M.S. Moura, A.R. da Silva, L.P. Antunes, A.M. da Silva, J.C. Setubal. Genome-centric analysis of a thermophilic and cellulolytic bacterial consortium derived from composting<\/a>. Frontiers in Microbiology, 8 (644), 2017.<\/p>\n

D. Amgarten, L.F. Martins, K.C. Lombardi, L.P. Antunes, A.P.S. de Souza, G.G. Nicastro, E.W. Kitajima, R.B. Quaggio, C. Upton, J.C. Setubal, A.M. da Silva. Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages<\/a>. BMC Genomics, 18 (346), 2017.<\/p>\n

2016<\/strong><\/p>\n

L.P. Antunes, L.F. Martins, R.V. Pereira, A.M. Thomas, D. Barbosa, L.N. Lemos, G.M.M. Silva, L.M.S. Moura, G.W.C. Epamino, L.A. Digiampietri, K.C. Lombardi, P.L. Ramos, R.B. Quaggio, J.C.F. de Oliveira, R.C. Pascon, J.B. da Cruz, A.M. da Silva, J.C. Setubal. Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics<\/a>. Scientific Reports, 6:38915, 2016<\/p>\n

2014<\/strong><\/p>\n

Trama, B., Fernandes, J.D.S, Labuto, G., Oliveira, J.C.F., Viana-Niero, C., Pascon, R.C. & Vallim, M.A. The evaluation of bioremediation potential of a yeast collection isolated from composting. <\/a> Advances in Microbiology 2014 (4), 796-807.<\/p>\n

2013<\/strong><\/p>\n

L.F. Martins, L. P. Antunes, R.C. Pascon, J.C. Franco de Oliveira, L.A. Digiampietri, D. Barbosa, B.M. Peixoto, M.A. Vallim, C. Viana-Niero, E.H. Ostroski, G.P. Telles, Z. Dias, J.B. da Cruz, L. Juliano, S. Verjovski-Almeida, A.M. da Silva, J.C. Setubal. Metagenomic analysis of a tropical composting operation at the S\u00e3o Paulo Zoo Park reveals diversity of biomass degradation functions and organisms<\/a>. PLoS ONE<\/i>, 8(4):e61928, 2013.<\/p>\n

 <\/p>\n

\n

X-Meeting 2015 – 11th International Conference of th AB3C + Brazilian Symposium of Bioinformatics<\/p>\n

POSTERS<\/strong><\/p>\n

Gianluca Major – Computational methods for metagenomic data processing in the Metazoo Project<\/a><\/p>\n

Raquel Riyuzo A. Franco – Analysis of fecal bacterial diversity in howler monkeys (Alouatta) through metagenomics <\/a><\/p>\n","protected":false},"excerpt":{"rendered":"

2022 D. Amgarten, B. Iha, C.M. Piroupo, A.M. da Silva, J.C. Setubal. vHULK, a new tool for bacteriophage host prediction based on annotated genomic features and neural networks. Phage, accepted. 2021 L. Braga, R.V. Pereira, L.F. Martins, L. Moura, F.B. … Continue lendo →<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"sidebar-page.php","meta":[],"yoast_head":"\n\n\n\n\n\n\n\n\n\n\n\n\n\t\n